Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq484 163 7e-35 seq780 145 2e-29 seq12 116 9e-21 seq123 98.7 2e-15 >seq484 Length=996536 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||| Sbjct 733056 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATT 732997 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 732996 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 732937 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 732936 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 732894 >seq780 Length=11850152 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||||||||| || || ||||| Sbjct 4730953 ATGCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCT 4731012 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||| ||| || || || Sbjct 4731013 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGG 4731072 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 4731073 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCG 4731132 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || ||||| |||||||| Sbjct 4731133 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4731182 >seq12 Length=3827242 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 3384416 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 3384475 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||||| ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 3384476 CTGAAGAAAAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 3384535 Query 269258 GA 269259 || Sbjct 3384536 GA 3384537 >seq123 Length=3649919 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 |||| |||||||| || || ||||| || |||||||| || |||||||| | || |||| Sbjct 2429600 TAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATTTTTT 2429659 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 || ||||||||||||| | ||||| ||| | ||||| || || ||| | || || || | Sbjct 2429660 GGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCAAATGAACTAATCAGTAGAG 2429719 Query 269256 ACGA 269259 | || Sbjct 2429720 ATGA 2429723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151311907312004