Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq886 158 2e-33
seq856 116 5e-21
>seq886
Length=3399623
Score = 158 bits (174), Expect = 2e-33
Identities = 227/318 (71%), Gaps = 3/318 (1%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || || || ||||| |||||| | ||||| || ||| | | |||
Sbjct 1179349 GGAAAGCAGTGAAAGGGCAGCCTTTCACGTTGTTGCAGACGAGCTTCTGTAAGGAGGCAG 1179290
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || | || ||||| | || ||||||||||| ||||||||||| | ||||
Sbjct 1179289 TATTGATTATTTCGAAGCCCACTTTCCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 1179230
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || |||| || ||||| || || || || || || | ||| | ||
Sbjct 1179229 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCGATCTCCACCATTG 1179170
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| |||||||||||||| || || |||||||| || | | || | ||||| |||||
Sbjct 1179169 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGACCTGGGTACAGCTCCA 1179110
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| || |||||||| ||||| | ||||| || || ||||| |||||||||||
Sbjct 1179109 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1179050
Query 8978 TTATTAATaaaaataaaa 8995
||||| || |||||||
Sbjct 1179049 TTATTGAT--GAATAAAA 1179034
Score = 140 bits (154), Expect = 5e-28
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| ||| || || ||||| || || ||| ||| |||||||| || |||||||
Sbjct 1177380 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1177321
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||||||| ||||| || ||||| |||||||| | || ||
Sbjct 1177320 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCCGGG 1177261
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || ||||||| | ||| | ||| || || | |||||
Sbjct 1177260 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1177201
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || ||||| |||
Sbjct 1177200 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 1177141
Query 9862 TG 9863
||
Sbjct 1177140 TG 1177139
>seq856
Length=10211694
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| || ||||||| || || |||||||||||||| | ||||
Sbjct 9654343 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGG 9654284
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||||||||| || | ||| | ||||
Sbjct 9654283 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGC 9654224
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || | ||||| |||| || || | || || || | || |||||||
Sbjct 9654223 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGTAAGCCTGGATAGAACTCCA 9654164
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || ||||||||||| ||
Sbjct 9654163 GAGCATCAATGTCTCCGTACAG 9654142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708472873988720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |