Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4113 123 4e-24 seq827 123 4e-24 >seq4113 Length=309 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 46 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 105 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 106 CCGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 165 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 166 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 225 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| ||||| ||||||| Sbjct 226 GCACGCCAAGCGCAAGACGGTCACGGCCATGGA 258 >seq827 Length=3065556 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2166975 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCAT 2166916 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2166915 CCGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2166856 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 2166855 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2166796 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| ||||| ||||||| Sbjct 2166795 GCACGCCAAGCGCAAGACGGTCACGGCCATGGA 2166763 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2193406 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCAT 2193347 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2193346 CCGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2193287 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 2193286 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2193227 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| ||||| ||||||| Sbjct 2193226 GCACGCCAAGCGCAAGACGGTCACGGCCATGGA 2193194 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2216312 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 2216371 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2216372 CCGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2216431 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 2216432 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2216491 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| ||||| ||||||| Sbjct 2216492 GCACGCCAAGCGCAAGACGGTCACGGCCATGGA 2216524 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2218156 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCAT 2218097 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2218096 CCGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2218037 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 2218036 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2217977 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || || ||||| ||||| ||||||| Sbjct 2217976 GCACGCCAAGCGCAAGACGGTCACGGCCATGGA 2217944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069839418059