Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq261 122 6e-23
seq858 98.7 7e-16
seq780 98.7 7e-16
seq173 89.7 3e-13
>seq261
Length=4975901
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| || ||||| ||||| || ||||||||
Sbjct 469337 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGT 469396
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 469397 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 469431
>seq858
Length=18609806
Score = 98.7 bits (108), Expect = 7e-16
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 17479842 TTCTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATTGGTCTC 17479783
Query 20005 GCGGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 17479782 ATGCCCGTATTTAGCCTTA 17479764
>seq780
Length=11850152
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38092 CACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACA 38151
||||||||| ||||| ||| | ||| || ||| ||||| || || ||||| || ||||
Sbjct 4731413 CACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACA 4731472
Query 38152 AAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGA 38211
|| | || || | || || || ||||| || || || || || |||| ||| |
Sbjct 4731473 GGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAA 4731532
Query 38212 CGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTT 38271
|||||| |||||| || || ||||||||||| | || || | || || |
Sbjct 4731533 TGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCT 4731592
Query 38272 CTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| | || || || || || |||||||| ||||| || |||||||||||
Sbjct 4731593 CAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 4731641
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||| ||||| ||| | ||| || ||| || || || || ||||| || |||
Sbjct 4730956 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAC 4731015
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || ||||| || || || || || |||| |||
Sbjct 4731016 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGA 4731075
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| || || ||||||||||| | || || | || ||
Sbjct 4731076 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 4731135
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||||||| ||||| || |||||||||
Sbjct 4731136 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 4731183
>seq173
Length=1281796
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||| ||||||||||||||||||||| || ||| ||||| | |||||||||||
Sbjct 391035 CTCTCTCTTTCAAGTTCTTTTCAACTTTCCCTTACAGTATTTGTTGGTTATCGGTCTCGT 391094
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 391095 GCCCATATTTAGCCTTA 391111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923266243153
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |