Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq431 91.5 1e-13 seq780 86.0 6e-12 >seq431 Length=331394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | || || ||||||||||| ||| ||||| || ||||||||| Sbjct 62411 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 62470 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || || ||||| | ||||||| |||||||||| ||| ||| ||||| Sbjct 62471 CTCTTTCGGTTGCAAGAGTCTTTGTAGAGCATGTATGGTGTGCCAGTCTC 62520 >seq780 Length=11850152 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 138391 CCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATA 138450 |||| || ||||| || | ||| | | | || ||||| || ||||||||||| || Sbjct 4731415 CCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGG 4731474 Query 138451 GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATA 138510 || ||| || || || || || || | | |||| || ||||| ||||| || || || Sbjct 4731475 GTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATG 4731534 Query 138511 CCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCG 138570 ||||| ||||| ||| || || | | || | |||||| | | ||| ||||| Sbjct 4731535 CCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCA 4731594 Query 138571 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || || ||||||| || || ||||| ||||||||| Sbjct 4731595 AGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 4731639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||||| || | ||| | | | || || || || ||||||||||| Sbjct 4730955 GCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGA 4731014 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || || | | |||| || ||||| ||||| || || Sbjct 4731015 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGG 4731074 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 4731075 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGAC 4731134 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||||| || || ||||| ||||||||| Sbjct 4731135 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 4731183 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || ||| || || || || || || | | Sbjct 4731217 GATTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCA 4731276 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || ||||| ||||| ||| || || | Sbjct 4731277 AAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACA 4731336 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 4731337 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 4731396 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 4731397 ACAAAGATCTGCATG 4731411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226030169360