Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq886 149 9e-31 seq856 109 8e-19 >seq886 Length=3399623 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 1177380 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1177321 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || ||||| Sbjct 1177320 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCCGGG 1177261 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || || | || | Sbjct 1177260 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1177201 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 1177200 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 1177141 Query 9967 TG 9968 || Sbjct 1177140 TG 1177139 Score = 141 bits (156), Expect = 1e-28 Identities = 211/297 (71%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || || || || ||||| ||| || | ||| ||| | || || | Sbjct 1179349 GGAAAGCAGTGAAAGGGCAGCCTTTCACGTTGTTGCAGACGAGCTTCTGTAAGGAGGCAG 1179290 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | ||| ||||||||||| |||||||||||| | |||| Sbjct 1179289 TATTGATTATTTCGAAGCCCACTTTCCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 1179230 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || || || || || | ||| | || Sbjct 1179229 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCGATCTCCACCATTG 1179170 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCG 9118 | ||||||||||||||||| || || || ||||| |||| |||| || | ||| || || Sbjct 1179169 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACGA-GAAGACCTGGGTACAGCTCC 1179111 Query 9119 ACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 1179110 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 1179054 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| ||||| || |||||||||||| Sbjct 1178538 TCAGGCAGAAGCGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTGG 1178479 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | || || ||||| | || | ||||||||| | Sbjct 1178478 TATTGAAATCGCTGGT--TGAACAGCAGTTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 1178421 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| ||||| | || | ||| || || ||||| || || Sbjct 1178420 CACTCAAGTGCTGCACATAGTCCTCAATAACAATCTTGATTGTTTCTCCTGT 1178369 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || || || |||| || || Sbjct 1175406 ACCTTTAACACCCATGGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTGTA 1175347 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| ||||| || Sbjct 1175346 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTATTGTAAGTTGG 1175287 Query 10509 GGGACTGTCAATCA 10522 ||||||||||||| Sbjct 1175286 TGGACTGTCAATCA 1175273 >seq856 Length=10211694 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 9654317 CCGCCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 9654258 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| || || || || || ||| | Sbjct 9654257 TTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGG 9654198 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | |||| || | ||| || | ||| || || || || Sbjct 9654197 GGTTTCTCAAGCAGTAAGCCTGGATAGAACTCCAGAGCATCAATGTCTCCGTACAGCTCT 9654138 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||| ||| || || |||| | ||| ||| Sbjct 9654137 TCCAGCTCTGCTGCATTCTCTTCCTCTCCT 9654108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723674959784200