Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq683 107 8e-18 seq792 100 1e-15 seq2109 87.8 7e-12 >seq683 Length=2443633 Score = 107 bits (118), Expect = 8e-18 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || ||||| |||||||| | || || || || || ||||||| Sbjct 557015 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 556956 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || |||| | ||||| | || ||||| ||||| || |||||||||||| Sbjct 556955 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 556896 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATT 451494 |||| ||||| || ||| || ||| | | | | ||| || ||| || | | || Sbjct 556895 TAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTTCTCATCTT 556838 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554 ||| || ||||| || ||| |||| || | ||| | ||||| ||||| | ||||| Sbjct 556837 TGACTTGGGTGGGGGTACTTTTGATGTGTCCATTCTTACCATTGAGGATGGAATCTTTGA 556778 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| | || |||||| || || || || || || || |||| || Sbjct 556777 GGTGAAGTCCACAGCTGGTGACACCCACCTGGGTGGGGAGGACTTTGACAA 556727 Score = 91.5 bits (100), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 14/243 (6%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTC 451953 || |||||||| || || || ||||| || || || || || ||| | || | | | Sbjct 556434 GAGATTGTGCTGGTGGGTGGCTCTACCCGTATCCCCAAGATCCAAAAGCTGCTACAGGAC 556375 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | || ||| | || |||||| | || || |||||||||||||| || Sbjct 556374 TTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAACCCCGATGAAGCTGTTGCTTA 556319 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGA 452070 ||| ||||| || |||||||||||||| | || ||| | ||| || | || Sbjct 556318 TGGCGCTGCTGTGCAAGCAGCTATTCTCATGGG---AGACAAGTCTGAGAATGTGCAGGA 556262 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | ||| | | ||||| || ||||| || || || |||| || ||||||||| |||| Sbjct 556261 TCTGCTGCTGTTGGATGTCACCCCTCTGTCCCTGGGCATTGAGACGGCTGGTGGAGTGAT 556202 Query 452131 GAC 452133 ||| Sbjct 556201 GAC 556199 >seq792 Length=3412358 Score = 100 bits (110), Expect = 1e-15 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | ||||| || |||||||||||||| | || || || || || Sbjct 2183391 GTTACTAATGCTGTGGTGACTGTGCCAGCTTATTTCAATGACTCTCAGCGTCAGGCTACA 2183332 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | || || || |||||||| ||||| || ||||| Sbjct 2183331 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACAGCT 2183272 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| |||| ||||| || ||| || Sbjct 2183271 GCTGCAATAGCCTATGG-CTTGGACAA 2183246 >seq2109 Length=819 Score = 87.8 bits (96), Expect = 7e-12 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 451188 AAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTC 451244 |||||| |||||| |||||||||| || | ||||| | || ||||| ||||||| Sbjct 285 AAAAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTC 226 Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||||| ||||||| || || || ||||| ||||| || || Sbjct 225 CTGAAGAAATTTCTGCTATGGTCCTAACAAAGATGAAGGAAACTGCTGA 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975569984651204