Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq683 131 1e-24 seq553 102 6e-16 seq792 95.1 9e-14 >seq683 Length=2443633 Score = 131 bits (144), Expect = 1e-24 Identities = 900/1438 (63%), Gaps = 24/1438 (2%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | ||||| || ||||| |||||||| | ||||| ||||| ||||| || |||| Sbjct 555960 CGGCACTGACATTCAGGATACCGTTGGCATCGATGTCAAAAGTGACCTCAATCTGGGGGA 556019 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || || || || || | || | ||||| || || || | Sbjct 556020 CTCCACGGGGTGCTGGGGGAATGCCCGTTAAGTCGAACTTGCCCAGCAAGTTGTTGTCCT 556079 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGA 517434 |||| | || ||||||||| | | |||| || | ||| | | || || || || Sbjct 556080 TAGTCATAGCTCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCCGA 556137 Query 517435 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 556138 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATAGTGGTGTTGCGCTTGATGAGAG 556196 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 |||||| | ||||| || || || | || || || ||||| |||||||| | || | Sbjct 556197 CGGTCATCACTCCACCAGCCGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 556256 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || || | || ||| | | || | |||||||||||||| | |||||| | Sbjct 556257 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGAATAGCTGCTTGCACAGCAGCGC 556316 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 |||| |||||||||||||| || || | | | || || | ||| |||||||| || | Sbjct 556317 CATAAGCAACAGCTTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGT 556376 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 || || | | | ||| || ||||| | || || || || | ||||| || | Sbjct 556377 CCTGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACAATCTCCT 556436 Query 517734 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 | | ||| || || || || | ||| | | | || || || || || || Sbjct 556437 GTATCTGACCCTTGTCAAGCTTGGCATCACGCAGAGCCTTCTCCACAGGCTCCAGGGTGC 556496 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA 517852 | | || | || | | || || ||||| || | ||| || || | || || Sbjct 556497 CACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAGAA 556554 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 ||||| || ||| | | ||||||| ||||| ||| ||| || ||||| || | Sbjct 556555 GTCAATGCCCTCGTAGAGGGAATCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGGT 556614 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTC 517969 || || || | ||||| ||||| | || | | | || | ||| ||| | Sbjct 556615 GCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTGTTGCCAGCA 556672 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTAT 518027 | || ||| | || | |||||| ||||| |||| ||| | || | || || | Sbjct 556673 ATGTCGCGTTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGT 556730 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 556731 CAAAGTCCTCCCCACCCAGGTGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCAT 556790 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | |||| | | || | |||||| || || ||||||| ||||| || || |||| Sbjct 556791 CCTCAATGGTAAGAATGGACACATCAAAAGTACCCCCACCCAAGTCAAAGATGAGAACAT 556850 Query 518148 TCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | ||| | || || || || | ||||| || | |||||| || || | Sbjct 556851 TCTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGG 556910 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| ||||| | || |||||||| |||| || | || |||||||| || || | Sbjct 556911 GCTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTAGCCT 556970 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTAC 518321 | | || || || || || || ||||| || || || || |||| |||| | Sbjct 556971 GGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACTTTGCGCC 557030 Query 518322 CAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 518381 | | ||| || || | | ||||| || | | | ||| || || | |||| Sbjct 557031 CCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTG 557090 Query 518382 GGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 518441 || | | ||| ||| | || |||| | | || || ||| ||| Sbjct 557091 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCAT 557150 Query 518442 TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 518501 | | || || ||||||| ||||| || || || || | |||||| | | | | Sbjct 557151 TCACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACTGTGGGGTCATCATACTTGC 557210 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 || || | || || |||||||| || || ||||| || || || || | || | | Sbjct 557211 GGCCGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCT 557270 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 |||| ||||| ||||| || | || || || || || | ||||| || || |||| Sbjct 557271 TGGCAGCATCACCAATAAGGCGCTCCGTATCAGTGAAGGCCACATAGCTGGGTGTGGTGC 557330 Query 518622 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || ||||| || || || || || || || |||| || | ||||| ||||| Sbjct 557331 GGTTGCCCTGATCGTTGGCGATGATCTCCACCTTGCCATGCTGGAAGACACCCACACA 557388 >seq553 Length=19410955 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | || ||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1092484 TGTTGTGGCTACAGTGGCGTTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1092425 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1092424 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1092365 Query 367113 TGATGG 367118 |||||| Sbjct 1092364 TGATGG 1092359 >seq792 Length=3412358 Score = 95.1 bits (104), Expect = 9e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| |||||| |||||| || || ||||| || |||| Sbjct 2184220 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGATTCTTTGCAGCATCGCCGATCAACC 2184279 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||| || ||| || || || || || || ||||| |||| Sbjct 2184280 TCTCGGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTGCCCTGGTCATTGGCAA 2184339 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | || | || || ||||| | | || || || | ||||| Sbjct 2184340 TGATTTCCACCTTCCCGTGCTGGAAGACGCCAACACAGGAATAGGTGGTGCCAAGATCAA 2184399 Query 518703 TACCAATAGC 518712 | |||| ||| Sbjct 2184400 TTCCAACAGC 2184409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780531458627278