Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq515 113 3e-20 seq780 105 4e-18 >seq515 Length=1665176 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || || | || | ||| ||| ||||| ||||| ||||| Sbjct 31774 TTACCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 31715 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || || | ||| |||| |||||||| || || ||||| || |||| |||||| || | Sbjct 31714 GAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGG 31655 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || |||||||| ||||| || ||| | || | |||| || |||| Sbjct 31654 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCA 31595 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 31594 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31545 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | ||| |||| |||||||| || || ||||| Sbjct 30368 TTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 30309 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || || | || |||||||| ||||| || ||| Sbjct 30308 GATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 30249 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 30248 CTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 30189 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 30188 AAAGATCTGCAT 30177 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | ||| |||| |||||||| || || ||||| Sbjct 30596 TTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 30537 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || || | || |||||||| ||||| || ||| Sbjct 30536 GATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 30477 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 30476 CTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 30417 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 30416 AAAGATCTGCAT 30405 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | ||| |||| |||||||| || || ||||| Sbjct 30824 TTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 30765 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || || | || |||||||| ||||| || ||| Sbjct 30764 GATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 30705 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 30704 CTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 30645 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 30644 AAAGATCTGCAT 30633 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | ||| |||| |||||||| || || ||||| Sbjct 31052 TTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 30993 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || || | || |||||||| ||||| || ||| Sbjct 30992 GATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 30933 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 30932 CTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 30873 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 30872 AAAGATCTGCAT 30861 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | ||| |||| |||||||| || || ||||| Sbjct 31280 TTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 31221 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || || | || |||||||| ||||| || ||| Sbjct 31220 GATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 31161 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 31160 CTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 31101 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 31100 AAAGATCTGCAT 31089 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | ||| |||| |||||||| || || ||||| Sbjct 31508 TTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 31449 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || || | || |||||||| ||||| || ||| Sbjct 31448 GATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTT 31389 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 31388 CTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 31329 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 31328 AAAGATCTGCAT 31317 >seq780 Length=11850152 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 4730991 TTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 4731050 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| || || | Sbjct 4731051 GATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 4731108 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || | |||||| Sbjct 4731109 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTC 4731168 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 4731169 ACAAAGATCTGCAT 4731182 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 4731219 TTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 4731278 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| || || | Sbjct 4731279 GATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 4731336 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 4731337 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 4731396 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 4731397 ACAAAGATCTGCAT 4731410 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 4730763 TTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 4730822 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| || || | Sbjct 4730823 GATCAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 4730880 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || || |||||| Sbjct 4730881 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 4730940 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 4730941 ACAAAGATCTGCAT 4730954 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 4731447 TTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 4731506 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| || || | Sbjct 4731507 GATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 4731564 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || | |||||| Sbjct 4731565 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTC 4731624 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 4731625 ACAAAGATCTGCATGTT 4731641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610403204664