Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq123 120 3e-22
seq12 111 2e-19
seq431 86.0 7e-12
>seq123
Length=3649919
Score = 120 bits (132), Expect = 3e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| || | |||||| ||||| || | |||||||| | ||||||||| |
Sbjct 2429725 CCTCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2429666
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || ||||||||||| || ||||| |||||||||||||
Sbjct 2429665 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2429606
Query 19103 CAACTA 19108
| ||||
Sbjct 2429605 CTACTA 2429600
>seq12
Length=3827242
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | ||||||||||| || ||||| |
Sbjct 3384539 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCT 3384480
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 3384479 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3384420
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 3384419 CAACCACTCTCTCACC 3384404
>seq431
Length=331394
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961
|| ||||||||| | | ||||| | | |||||| | ||| ||||| | |||||||
Sbjct 62388 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGA 62447
Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021
| || ||||| || || ||||| | ||| || | ||| ||||| ||||| | |
Sbjct 62448 TGGTCCCCAAGTTCTGCTGATTGCTCTTTCGGTTGCAAGAGTCTTTGTAGAGCATGTATG 62507
Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054
|||| ||||| || |||| |||||||||||||
Sbjct 62508 GTGTGCCAGTCTCCGTCTGTGATTCAATGATAG 62540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562067604451320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |