Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq792 118 9e-21 seq683 111 1e-18 seq515 86.0 5e-11 >seq792 Length=3412358 Score = 118 bits (130), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 2183391 GTTACTAATGCTGTGGTGACTGTGCCAGCTTATTTCAATGACTCTCAGCGTCAGGCTACA 2183332 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 2183331 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACAGCT 2183272 Query 550511 GCTGCACTTGCATATGGACTTG 550532 |||||| | || ||||| |||| Sbjct 2183271 GCTGCAATAGCCTATGG-CTTG 2183251 >seq683 Length=2443633 Score = 111 bits (122), Expect = 1e-18 Identities = 354/546 (65%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || ||||| ||||| | || |||| || Sbjct 557421 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGTGTGGGTGTCTTCCAGCATGGCAAG 557362 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| ||||| || ||| | || || || ||||| | ||||| Sbjct 557361 GTGGAGATCATCGCCAACGATCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 557302 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | |||||||||| || || | || | || || |||||||| Sbjct 557301 GATACGGAGCGCCTTATTGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 557242 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || || | || || | | | | |||| | || || ||| | Sbjct 557241 ACCATCTTTGATGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCT 557182 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 557181 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGTGCAAGTG 557122 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 557121 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 557067 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || || | | | || | |||| | |||| || | Sbjct 557066 TTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCTGTCA 557007 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || ||||| ||||||||||| | Sbjct 557006 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCTACCAAAGATGCTGGCACCA 556947 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | |||||||||||||| || || || ||||| | || |||| Sbjct 556946 TCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 556887 Query 550527 GACTTG 550532 | |||| Sbjct 556886 G-CTTG 556882 >seq515 Length=1665176 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 30398 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 30339 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||||| ||||| || Sbjct 30338 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCC 30279 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 30278 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 30219 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 30218 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30177 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 30626 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 30567 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||||| ||||| || Sbjct 30566 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCC 30507 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 30506 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 30447 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 30446 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30405 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 30854 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 30795 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||||| ||||| || Sbjct 30794 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCC 30735 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 30734 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 30675 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 30674 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30633 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 31082 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 31023 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||||| ||||| || Sbjct 31022 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCC 30963 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 30962 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 30903 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 30902 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30861 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 31310 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 31251 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||||| ||||| || Sbjct 31250 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCC 31191 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 31190 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 31131 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 31130 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31089 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 31538 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 31479 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||||| ||||| || Sbjct 31478 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCC 31419 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 31418 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 31359 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 31358 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31317 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 31766 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 31707 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||| || ||||| || Sbjct 31706 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCC 31647 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 31646 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 31587 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 31586 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028985938117870