Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq792 86.0 4e-11 seq553 86.0 4e-11 >seq792 Length=3412358 Score = 86.0 bits (94), Expect = 4e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||||||||| || ||||| |||||||| || || ||||||||||| Sbjct 2181656 GGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGCC 2181597 Query 476150 AATGGTATTCTTAATGT 476166 ||||| || || ||||| Sbjct 2181596 AATGGCATCCTGAATGT 2181580 >seq553 Length=19410955 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 1092359 CCATCACGACCAGCTCTCCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 1092418 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || ||||||||||| || | ||| || Sbjct 1092419 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAACGCCACTGTAGCC 1092478 Query 627889 AC 627890 || Sbjct 1092479 AC 1092480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267927707482724