Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq780 125 6e-24
seq515 113 3e-20
>seq780
Length=11850152
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || |||| ||||||||| | ||| || ||||||||||| || ||||| || || |
Sbjct 4730956 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAC 4731015
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || ||||||||| | |||| | ||||| || || |||
Sbjct 4731016 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGA 4731075
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || ||| | || | |||||| | || ||
Sbjct 4731076 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 4731135
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || |||||||| ||||| || ||||| ||||||||
Sbjct 4731136 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4731182
>seq515
Length=1665176
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 31771 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 31712
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| || |||
Sbjct 31711 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGA 31652
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 31651 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 31592
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 31591 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31545
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 30403 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 30344
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 30343 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 30284
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 30283 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 30224
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 30223 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30177
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 30631 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 30572
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 30571 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 30512
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 30511 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 30452
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 30451 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30405
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 30859 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 30800
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 30799 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 30740
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 30739 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 30680
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 30679 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30633
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 31087 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 31028
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 31027 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 30968
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 30967 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 30908
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 30907 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 30861
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 31315 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 31256
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 31255 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 31196
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 31195 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 31136
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 31135 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31089
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 31543 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 31484
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 31483 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 31424
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || || ||||| || | || || || | || | |||||| | || ||
Sbjct 31423 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 31364
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || |||||||| | ||| || ||||| ||||||||
Sbjct 31363 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 31317
Score = 89.7 bits (98), Expect = 4e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| |||||||| | ||| || |||||||| || || ||||| || || |
Sbjct 30175 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 30116
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||||||| | || | |||||||||||| | |||
Sbjct 30115 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGA 30056
Query 29680 ATACCCTCTTTGTCTTG 29696
|| || || ||||| ||
Sbjct 30055 ATGCCTTCCTTGTCCTG 30039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385191674041683
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |