Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq683 131 1e-24 seq553 96.9 3e-14 seq792 91.5 1e-12 >seq683 Length=2443633 Score = 131 bits (144), Expect = 1e-24 Identities = 676/1065 (63%), Gaps = 24/1065 (2%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | ||||| || ||||| |||||||| | ||||| ||||| ||||| || |||| Sbjct 555960 CGGCACTGACATTCAGGATACCGTTGGCATCGATGTCAAAAGTGACCTCAATCTGGGGGA 556019 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || || || || || | || | ||||| || || || | Sbjct 556020 CTCCACGGGGTGCTGGGGGAATGCCCGTTAAGTCGAACTTGCCCAGCAAGTTGTTGTCCT 556079 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGA 281601 |||| | || ||||||||| | | |||| || | ||| | | || || || || Sbjct 556080 TAGTCATAGCTCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCCGA 556137 Query 281602 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 556138 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATAGTGGTGTTGCGCTTGATGAGAG 556196 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 |||||| | |||||||| || || | || || || ||||| |||||||| | || | Sbjct 556197 CGGTCATCACTCCACCAGCCGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 556256 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || ||| | | || | |||||||||||||| | |||||| | Sbjct 556257 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGAATAGCTGCTTGCACAGCAGCGC 556316 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 |||| |||||||||||||| || || | | | || || | ||| |||||||| || | Sbjct 556317 CATAAGCAACAGCTTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGT 556376 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 || || | | | ||| || ||||| | || || || || | ||||| || | Sbjct 556377 CCTGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACAATCTCCT 556436 Query 281901 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 | | ||| || || || || | ||| | | | || || || || || || Sbjct 556437 GTATCTGACCCTTGTCAAGCTTGGCATCACGCAGAGCCTTCTCCACAGGCTCCAGGGTGC 556496 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA 282019 | | || | || | | || || ||||| || | ||| || || | || || Sbjct 556497 CACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAGAA 556554 Query 282020 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 ||||| || ||| | | ||||||| ||||| ||| ||| || ||||| || | Sbjct 556555 GTCAATGCCCTCGTAGAGGGAATCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGGT 556614 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTC 282136 || || || | ||||| ||||| | || | | | || | ||| ||| | Sbjct 556615 GCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTGTTGCCAGCA 556672 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTAT 282194 | || ||| | || | |||||| ||||| |||| ||| | || | || || | Sbjct 556673 ATGTCGCGTTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGT 556730 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 556731 CAAAGTCCTCCCCACCCAGGTGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCAT 556790 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | || | |||||| || || ||||||| ||||| || || |||| Sbjct 556791 CCTCAATGGTAAGAATGGACACATCAAAAGTACCCCCACCCAAGTCAAAGATGAGAACAT 556850 Query 282315 TCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | ||| | || || || || | ||||| || | |||||| || || | Sbjct 556851 TCTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGG 556910 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| ||||| | || |||||||| |||| || | || |||||||| || || | Sbjct 556911 GCTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTAGCCT 556970 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | | || || || || || || ||||| || || || || |||| Sbjct 556971 GGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCAT 557015 >seq553 Length=19410955 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | || ||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1092484 TGTTGTGGCTACAGTGGCGTTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1092425 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1092424 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1092365 Query 131296 TGATGG 131301 |||||| Sbjct 1092364 TGATGG 1092359 >seq792 Length=3412358 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | |||| |||||| || || ||||| || |||| Sbjct 2184220 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGATTCTTTGCAGCATCGCCGATCAACC 2184279 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||| || ||| || || || || || || ||||| |||| Sbjct 2184280 TCTCGGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTGCCCTGGTCATTGGCAA 2184339 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || || | || | || || ||||| | | || || || | ||||| Sbjct 2184340 TGATTTCCACCTTCCCGTGCTGGAAGACGCCAACACAGGAATAGGTGGTGCCAAGATCAA 2184399 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 2184400 TTCCAACAGC 2184409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740342551477038