Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq977 104 2e-17 seq123 102 6e-17 seq12 95.1 1e-14 >seq977 Length=740791 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 261395 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 261336 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 261335 CTTGCCAACTCTATCAGAGGTCCGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 261276 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 261275 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 261239 >seq123 Length=3649919 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || ||||||| |||||||| || |||||||| || || ||||| Sbjct 2429590 GGAGAGCGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 2429649 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || |||||||| | || ||||||||||| || Sbjct 2429650 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCAAATGAACTA 2429709 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 2429710 ATCAGTAGAGATGA 2429723 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 43941 GTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGA 44000 |||| ||||| || || || || || |||||||| ||||| ||||||||||||||||| | Sbjct 2427134 GTTTCTATGGCTTCCAGATCGCAATGGAAAATATACATTCAGAAATGTACAGTCTTCTTA 2427193 Query 44001 TAGATACGTACATCAAAGAT 44020 | || || ||||| |||||| Sbjct 2427194 TTGACACCTACATTAAAGAT 2427213 >seq12 Length=3827242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 3389649 AAAACCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 3389708 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| |||||||||||| | | || ||| ||||| |||||| || | Sbjct 3389709 AGCGGGTTTCAGAATATCAGCGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 3389768 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 3389769 CTCTGGATGCAGATTT 3389784 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 ||||||||||| ||||| ||||| ||||| ||| ||| || || |||| || || ||| Sbjct 3380784 CCAGAAGCACGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAACGTTCACTCAGAGATG 3380843 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||| || |||||||| || ||||||||||| Sbjct 3380844 TACAGCCTGCTGATAGACACCTACATCAAAGA 3380875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397427599657315