Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq780 118 2e-21 >seq780 Length=11850152 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| |||||||| || || || || || ||||||||||| || | | || Sbjct 4730733 CCTCAGGCGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGT 4730792 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || |||||||| |||| ||||||||| | | || || Sbjct 4730793 GCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGGGGAATGCC 4730852 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 4730853 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 4730909 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| || || |||||||| |||| |||||| Sbjct 4730910 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4730954 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| |||||||| || || || || || ||||||||||| || | | || Sbjct 4731189 CCTCAGGCGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGT 4731248 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || || ||||| |||| ||||||||| | | || || Sbjct 4731249 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCC 4731308 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 4731309 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 4731365 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 ||| || || || ||||| || || |||||||| |||| |||||| | ||| Sbjct 4731366 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTCACC 4731416 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || ||||| ||||||||||| || | | || | ||||||| Sbjct 4730971 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCT 4731030 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||| ||||||||| | | || |||||||| || Sbjct 4731031 TCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 4731090 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 4731091 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATG 4731147 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||||| |||| |||||| Sbjct 4731148 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4731182 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | ||||||| Sbjct 4731427 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCT 4731486 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||| ||||||||| | | || |||||||| || Sbjct 4731487 TCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 4731546 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 4731547 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATG 4731603 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || | |||||||| |||| |||||| || Sbjct 4731604 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 4731641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153734125342073