Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq886 167 3e-36 seq856 102 1e-16 >seq886 Length=3399623 Score = 167 bits (184), Expect = 3e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 1177380 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1177321 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 1177320 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCCGGG 1177261 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 1177260 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1177201 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 1177200 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 1177141 Query 9484 TG 9485 || Sbjct 1177140 TG 1177139 Score = 152 bits (168), Expect = 7e-32 Identities = 223/314 (71%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || || || || || |||||| | ||||| || ||| | | || Sbjct 1179349 GGAAAGCAGTGAAAGGGCAGCCTTTCACGTTGTTGCAGACGAGCTTCTGTAAGGAGGCAG 1179290 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || |||| ||||| | || ||||||||||| || ||||||||| | |||| Sbjct 1179289 TATTGATTATTTCGAAGCCCACTTTCCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 1179230 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||| || || || | ||| | || Sbjct 1179229 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCGATCTCCACCATTG 1179170 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | |||||||||||||| || || |||||||| || | | || | ||||||||||| Sbjct 1179169 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGACCTGGGTACAGCTCCA 1179110 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 1179109 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1179050 Query 8588 TTATTAATAAAAAA 8601 ||||| || || || Sbjct 1179049 TTATTGATGAATAA 1179036 >seq856 Length=10211694 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| || || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 9654319 CTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 9654260 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 9654259 CCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 9654200 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || | || | ||||| ||| || | ||||||||| || Sbjct 9654199 GGGGTTTCTCAAGCAGTAAGCCTGGATAGAACTCCAGAGCATCAATGTCTCCGTACAGCT 9654140 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | || || || || |||| | |||||||| Sbjct 9654139 CTTCCAGCTCTGCTGCATTCTCTTCCTCTCCTGT 9654106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716824261891520