Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq57 111 3e-19 >seq57 Length=1869591 Score = 111 bits (122), Expect = 3e-19 Identities = 106/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| ||||||||| | ||| | ||||||||||| |||||||| | |||||||| Sbjct 1216670 GCTTTTTTCGGAGCTCAGATGAATGCATTTATCCATGTCATTATGTATATGTATTATGGA 1216729 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | |||||||| || || ||||||||||| || | ||||| Sbjct 1216730 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACTAT 1216788 Query 52176 AATGCAGTTGGTA 52188 | ||||||||||| Sbjct 1216789 ATTGCAGTTGGTA 1216801 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || ||||| || |||| ||||| || ||||| || || Sbjct 1217300 GGTGCAGTTCCATGTGACTATTGGCCATACAGCCTTGTCTATTTATATTGATTGTCCTTT 1217359 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || || ||||| || ||| || ||| ||||| || | | ||||| || |||||||| Sbjct 1217360 CCCTAAGTGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 1217419 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 1217420 TAACTTCTACTATCGGACATATAAG 1217444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923115777940840