Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq832 116 2e-21 seq339 104 2e-17 >seq832 Length=5409120 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| ||||| || | || |||| ||||||||| || || Sbjct 329247 TTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 329306 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || ||||||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 329307 GATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 329366 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | |||||||| ||||| || || || ||||| Sbjct 329367 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 329426 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 329427 AAAGATCTGCAT 329438 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| ||||| || |||| |||| ||||||||| || || Sbjct 329019 TTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 329078 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 329079 GATCAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 329138 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | |||||||| ||||| || || || ||||| Sbjct 329139 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 329198 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 329199 AAAGATCTGCAT 329210 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| ||||| || | || |||| ||||||||| || || Sbjct 329475 TTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 329534 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || ||||||||||||||| ||| | || |||||||| ||||| ||| | || Sbjct 329535 GATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 329594 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | |||||||| ||||| || || || ||||| Sbjct 329595 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 329654 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 329655 AAAGATCTGCAT 329666 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| ||||| || | || |||| ||||||||| || || Sbjct 329703 TTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 329762 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||| ||||| ||| | || |||||||| ||||| ||| | || Sbjct 329763 GATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 329822 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | |||||||| ||||| || | || ||||| Sbjct 329823 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 329882 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 329883 AAAGATCTGCAT 329894 >seq339 Length=1012135 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| || || | || ||| ||||| ||||||||||| || Sbjct 50169 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 50110 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || |||| ||||||||| || || ||||| | ||||| ||| ||| Sbjct 50109 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGA 50050 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||||| | | || | || | | || || Sbjct 50049 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 49990 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||||||||||||||| Sbjct 49989 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 49943 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| || || | || ||| ||||| ||||||||||| || Sbjct 49941 CCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 49882 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || |||| ||||||||| || || ||||| | |||||| || ||| Sbjct 49881 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCAGGGGGA 49822 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | || | | || || Sbjct 49821 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 49762 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||||| || || || ||||| ||||||||||| Sbjct 49761 TCCAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 49715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323044355233760