Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq832 107 1e-18 seq339 100 2e-16 >seq832 Length=5409120 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | || || | |||||||| || Sbjct 329692 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGC 329751 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || ||||| || ||| | ||||||||| || || | Sbjct 329752 TTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 329811 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| ||||||| |||| ||||||| | ||||| ||| Sbjct 329812 GCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 329871 Query 18303 AATGTTTTTACAAAAATTTGCATTTTTAA 18331 || || || ||||| || ||||| || || Sbjct 329872 AAGGTCTTCACAAAGATCTGCATGTTGAA 329900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | || || | |||||||| || Sbjct 329236 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGC 329295 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || ||| | ||||||||| || || | Sbjct 329296 TTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 329355 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| ||||||| |||| ||||||| | ||||| ||| Sbjct 329356 GCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 329415 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 329416 AGGGTCTTCACAAAGATCTGCAT 329438 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | || || | |||||||| || Sbjct 329464 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGC 329523 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || ||| | ||||||||| || || | Sbjct 329524 TTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 329583 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| ||||||| |||| ||||||| | ||||| ||| Sbjct 329584 GCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 329643 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 329644 AGGGTCTTCACAAAGATCTGCAT 329666 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | || || | ||||||| || Sbjct 329008 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGC 329067 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || ||| | ||||||||| || || | Sbjct 329068 TTGCCAGCAAAGATCAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 329127 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| ||||||| |||| ||||||| | ||||| ||| Sbjct 329128 GCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 329187 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 329188 AGGGTCTTCACAAAGATCTGCAT 329210 >seq339 Length=1012135 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| || Sbjct 49917 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 49858 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| ||||| || ||||| ||| | ||||||||| || || | Sbjct 49857 TTGCCAGCAAAGATGAGTCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 49798 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| ||| | ||||||| ||||||| ||| Sbjct 49797 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTTTTGCCAGTC 49738 Query 18303 AATGTTTTTACAAAAATTTGCATTTTTA 18330 | || || || || || |||||||||| Sbjct 49737 AGGGTCTTCACGAAGATCTGCATTTTTA 49710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| || Sbjct 50145 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 50086 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| |||||||| ||||| ||| | ||||||||| || || | Sbjct 50085 TTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 50026 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 50025 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 49966 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 49965 AGGGTCTTCACAAAGATCTGCAT 49943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379311540126645