Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq339 95.1 1e-14 seq213 93.3 4e-14 >seq339 Length=1012135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||| || | |||||||||||| || |||||||| ||| Sbjct 50097 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCCTTCCTTG 50038 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || |||| | || | ||||| ||||||| ||||| | ||| | Sbjct 50037 TCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATG 49978 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 49977 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 49943 >seq213 Length=2372662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTT 153742 |||||||| | ||||| |||||||||||| || | || ||| | || |||||||| || Sbjct 2159977 ACTATTTCTGTACACAGATTGCTGCATTTGATG-GTCCCCAAGTTCTGCTGATTGCTCTT 2159919 Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||||| |||| ||| ||||| ||||||||||||||||| || || Sbjct 2159918 TCGGTTGCAAGAGTCTTTGTAGAGCATGTATGGTGTGCCAGTCTC 2159874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496020464183200