Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq319 129 8e-25 seq745 123 3e-23 seq213 96.9 5e-15 >seq319 Length=11147124 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | || | Sbjct 5779562 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCT 5779503 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 5779502 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5779443 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 5779442 CAACCACTCTCTCACC 5779427 >seq745 Length=18327016 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| |||| ||| || ||||| |||||||| ||||||| || | || | Sbjct 16058346 CCTCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 16058287 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 16058286 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 16058227 Query 42207 C 42207 | Sbjct 16058226 C 16058226 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||||||||| | || |||||||| || | || || || ||||| ||||| ||| Sbjct 16059622 GACATAACTCCCATTCTCTGATATTCACCTACTCTCTTCTCAAAGAAATTGGTCTTGCCT 16059563 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 16059562 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 16059528 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | |||||| |||||||||||||| || ||| Sbjct 16055842 TCCTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 16055783 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || ||||| || || |||||||| | || || |||| ||||||||| Sbjct 16055782 TCCATTGCGATCTGGAAGCCATAGAAACAGCGAGCTTCTGTAATTTGTACTTCT 16055729 >seq213 Length=2372662 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 2158620 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 2158561 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || || ||||| |||||| || || ||| | | ||||| ||||||| || Sbjct 2158560 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATATCCAAATGCCATGG 2158502 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 2158501 CTCCAGGTAGATGGC 2158487 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| ||||| || || || || || |||||||| ||||||| || |||||| Sbjct 2156366 GTACCTGCATTGAATAACGTGGGGGAGGCATGGGTAAACCACCTTTCAGAGAGAAGATTG 2156307 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || ||||| || | || || || || || || || |||| || | ||| ||| Sbjct 2156306 TAGGTTTCAATTGCAGCATCAATGTCATTTTTGTGGATCCCCACCGATACTCTCATCAAC 2156247 Query 72538 ATATGCTGAGG 72548 ||||||||||| Sbjct 2156246 ATATGCTGAGG 2156236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671080299145960