Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq213 89.7 5e-13 seq339 86.0 6e-12 >seq213 Length=2372662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 2159977 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAGTTCTGCTGATTGCTCTT 2159919 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | |||||| |||||||| || || | || ||| || Sbjct 2159918 TCGGTTGCAAGAGTCTTTGTAGAGCATGTATGGTGTGCCAGTCTCCGTCTGTGATTCAAT 2159859 Query 157225 GAT 157227 ||| Sbjct 2159858 GAT 2159856 >seq339 Length=1012135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 |||| |||| ||| | || ||||| || || |||||||| || | |||| || | Sbjct 50157 CGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCA 50098 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || || || |||||| |||| || | |||||||||||| || |||||||| || Sbjct 50097 -TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCCTTCCTT 50039 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || |||| | || | ||||| |||| || || || | || | Sbjct 50038 GTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGAT 49979 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| |||| || || || || || ||||| Sbjct 49978 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 49943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506969903148720