Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq57 163 7e-35 seq832 156 1e-32 seq339 145 2e-29 seq319 116 9e-21 seq745 98.7 2e-15 >seq57 Length=1869591 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||| Sbjct 1214309 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATT 1214368 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 1214369 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1214428 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1214429 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1214471 >seq832 Length=5409120 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 329665 ATGCCACCCCTCAGGCGGAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCT 329724 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || ||||||||||| ||||| Sbjct 329725 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGG 329784 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 329785 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCG 329844 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| | || || ||||| |||||||| ||| Sbjct 329845 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTTG 329898 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 329209 ATGCCACCCCTCAGGCGGAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCT 329268 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||| ||| || || || Sbjct 329269 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGG 329328 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 329329 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCG 329388 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 329389 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 329438 >seq339 Length=1012135 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || |||||||| | || ||||| ||||| || || |||||| Sbjct 49944 ATGCCACCCCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 49885 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || || ||||| |||||||| Sbjct 49884 GAGAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCAGGG 49825 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 49824 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 49765 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || || || ||||| || || || || || ||||||||||| Sbjct 49764 ACTTCCAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 49712 >seq319 Length=11147124 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 5779439 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 5779498 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||||| ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 5779499 CTGAAGAAAAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 5779558 Query 269258 GA 269259 || Sbjct 5779559 GA 5779560 >seq745 Length=18327016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 |||| |||||||| || || ||||| || |||||||| || |||||||| | || |||| Sbjct 16058221 TAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATTTTTT 16058280 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 || ||||||||||||| | ||||| ||| | ||||| || || ||| | || || || | Sbjct 16058281 GGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCAAATGAACTAATCAGTAGAG 16058340 Query 269256 ACGA 269259 | || Sbjct 16058341 ATGA 16058344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151294824157868