Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq108 98.7 7e-16 seq803 89.7 3e-13 seq832 84.2 1e-11 >seq108 Length=3569293 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 ||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 2785194 TTCTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATTGGTCTC 2785135 Query 20005 GCGGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 2785134 ATGCCCGTATTTAGCCTTA 2785116 >seq803 Length=2332416 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||| ||||||||||||||||||||| || ||| ||||| | ||||||||||| Sbjct 1276185 CTCTCTCTTTCAAGTTCTTTTCAACTTTCCCTTACAGTATTTGTTGGTTATCGGTCTCGT 1276126 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 1276125 GCCCATATTTAGCCTTA 1276109 >seq832 Length=5409120 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| |||| ||| | ||| | ||| || ||| ||||| || || ||||| || || Sbjct 328983 ACCACCCCTCAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGA 329042 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || |||| || | || || || ||||| || || || || || || | ||| Sbjct 329043 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCAGGGGG 329102 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||| |||||| || || ||||||||||| | || || | || || Sbjct 329103 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGAC 329162 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| ||||| || ||||||||| Sbjct 329163 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 329211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334918539091451