Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq832 125 2e-23 seq339 122 2e-22 >seq832 Length=5409120 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || ||||| |||| ||||||||| | || || | |||||| Sbjct 329455 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCT 329514 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || ||| ||||| ||| Sbjct 329515 TCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 329574 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || || | ||||| ||| Sbjct 329575 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 329634 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 329635 TTGCCAGTCAGGGTCTTCACAAAGATCTG 329663 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || ||||| |||| ||||||||| | || || | || ||| Sbjct 328999 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 329058 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || ||| ||||| ||| Sbjct 329059 TCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 329118 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || || | ||||| ||| Sbjct 329119 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 329178 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 329179 TTGCCAGTCAGGGTCTTCACAAAGATCTG 329207 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || || || |||| ||||||||| | || || | |||||| Sbjct 329227 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCT 329286 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || ||| ||||| ||| Sbjct 329287 TCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 329346 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || || | ||||| ||| Sbjct 329347 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 329406 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 329407 TTGCCAGTCAGGGTCTTCACAAAGATCTG 329435 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || || || |||| ||||||||| | || || | |||||| Sbjct 329683 AGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCT 329742 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||| ||||| || ||| ||||| ||| Sbjct 329743 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 329802 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || || | ||||| ||| Sbjct 329803 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 329862 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || |||||||| || || Sbjct 329863 TTGCCAGTCAAGGTCTTCACAAAGATCTG 329891 >seq339 Length=1012135 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || || || || ||||| |||| ||||||||||| | || | |||||| Sbjct 50155 CAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATC 50096 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | ||||| || || ||| ||||| || Sbjct 50095 TTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCCTTCCTTGTC 50036 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| | | || || ||||| ||||| || Sbjct 50035 CTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGT 49976 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 49975 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 49946 Score = 118 bits (130), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || || || || ||||| |||| ||||||||||| | || | |||||| Sbjct 49927 CAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATC 49868 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || |||||||| | |||||| || || ||| ||||| || Sbjct 49867 TTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 49808 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || |||| ||||| || Sbjct 49807 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 49748 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| || || || |||||| Sbjct 49747 TTTGCCAGTCAGGGTCTTCACGAAGATCTG---CATTTT 49712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178815548265407