Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq878 107 8e-18 seq688 95.1 5e-14 seq347 87.8 7e-12 >seq878 Length=2428478 Score = 107 bits (118), Expect = 8e-18 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || ||||| |||||||| | || || || || || ||||||| Sbjct 1880643 ATGCTGTCATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 1880702 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || |||| | ||||| | || ||||| ||||| || |||||||||||| Sbjct 1880703 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTA 1880762 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATT 451494 |||| ||||| || ||| || ||| | | | | ||| || ||| || | | || Sbjct 1880763 TAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTTCTCATCTT 1880820 Query 451495 TGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGA 451554 ||| || ||||| || ||| |||| || | ||| | ||||| ||||| | ||||| Sbjct 1880821 TGACTTGGGTGGGGGTACTTTTGATGTGTCCATTCTTACCATTGAGGATGGAATCTTTGA 1880880 Query 451555 AGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| | || |||||| || || || || || || || |||| || Sbjct 1880881 GGTGAAGTCCACAGCTGGTGACACCCACCTGGGTGGGGAGGACTTTGACAA 1880931 Score = 91.5 bits (100), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTC 451953 || |||||||| || || || ||||| || || || || || ||| | || | | | Sbjct 1881224 GAGATTGTGCTGGTGGGTGGCTCTACCCGTATCCCCAAGATCCAAAAGCTGCTACAGGAC 1881283 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | || ||| | || |||||| | || || |||||||||||||| || Sbjct 1881284 TTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAACCCCGATGAAGCTGTTGCTTA 1881339 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGA 452070 ||| ||||| || |||||||||||||| | || ||| | ||| || | || Sbjct 1881340 TGGCGCTGCTGTGCAAGCAGCTATTCTCATGGG---AGACAAGTCTGAGAATGTGCAGGA 1881396 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | ||| | | ||||| || ||||| || || || |||| || ||||||||| |||| Sbjct 1881397 TCTGCTGCTGTTGGATGTCACCCCTCTGTCCCTGGGCATTGAGACGGCTGGTGGAGTGAT 1881456 Query 452131 GAC 452133 ||| Sbjct 1881457 GAC 1881459 >seq688 Length=1735070 Score = 95.1 bits (104), Expect = 5e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | ||||| || || ||||||||||| | || || || || || Sbjct 651325 GTTACTAATGCTGTGGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 651266 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | || || || |||||||| ||||| || ||||| Sbjct 651265 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACAGCT 651206 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAA 451459 ||||| |||| ||||| || ||| || Sbjct 651205 GCTGCAATAGCCTATGG-CTTGGACAA 651180 >seq347 Length=1893273 Score = 87.8 bits (96), Expect = 7e-12 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 451188 AAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTC 451244 |||||| |||||| |||||||||| || | ||||| | || ||||| ||||||| Sbjct 1136522 AAAAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTC 1136581 Query 451245 CTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||||| ||||||| || || || ||||| ||||| || || Sbjct 1136582 CTGAAGAAATTTCTGCTATGGTCCTAACAAAGATGAAGGAAACTGCTGA 1136630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975540671164268