Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq688 118 9e-21 seq878 107 2e-17 seq339 98.7 8e-15 >seq688 Length=1735070 Score = 118 bits (130), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 651325 GTTACTAATGCTGTGGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 651266 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 651265 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACAGCT 651206 Query 550511 GCTGCACTTGCATATGGACTTG 550532 |||||| | || ||||| |||| Sbjct 651205 GCTGCAATAGCCTATGG-CTTG 651185 Score = 86.0 bits (94), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| |||||||| || | || | || || Sbjct 652344 AGCTGTTGGAATTGATCTTGGCACCACCTATTCCTGTGTTGGCGTCTTCCAGCACGGGAA 652285 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || || ||| | || || ||| || ||| | ||||| Sbjct 652284 GGTGGAAATCATTGCCAATGACCAGGGCAACCGGACCACGCCAAGCTACGTTGCCTTCAC 652225 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || ||||| || | || ||||| ||||| |||||| || || ||||| ||| Sbjct 652224 AGATACTGAGAGGTTGATCGGCGATGCTGCAAAGAATCAAGTTGCAATG--AATCCAACC 652167 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 652166 AATACGGTTTTTG 652154 >seq878 Length=2428478 Score = 107 bits (118), Expect = 2e-17 Identities = 353/546 (65%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || ||||| | || |||| || Sbjct 1880237 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAG 1880296 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| ||||| || ||| | || || || ||||| | ||||| Sbjct 1880297 GTGGAGATCATCGCCAACGATCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 1880356 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | |||||||||| || || | || | || || |||||||| Sbjct 1880357 GATACGGAGCGCCTTATTGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 1880416 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || || | || || | | | | |||| | || || ||| | Sbjct 1880417 ACCATCTTTGATGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCT 1880476 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 1880477 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGTGCAAGTG 1880536 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 1880537 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 1880591 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || || | | | || | |||| | |||| || | Sbjct 1880592 TTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCTGTCA 1880651 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || ||||| ||||||||||| | Sbjct 1880652 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCTACCAAAGATGCTGGCACCA 1880711 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | |||||||||||||| || || || ||||| | || |||| Sbjct 1880712 TCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 1880771 Query 550527 GACTTG 550532 | |||| Sbjct 1880772 G-CTTG 1880776 >seq339 Length=1012135 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 49936 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 49877 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || ||||| ||||||||||| ||||| || Sbjct 49876 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCAGGGGGAATGCC 49817 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || || || |||||| || ||| || | | ||| || Sbjct 49816 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAG 49757 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| ||||| || || || ||||| || ||||| Sbjct 49756 GGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 49715 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || || ||||| ||||| ||| || || ||||| |||| || || Sbjct 50164 CCTCAGGCGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGT 50105 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | |||||| || || || || ||||| || |||||||||||||| || ||||| || Sbjct 50104 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCC 50045 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||||| |||||| || ||| || | | || | Sbjct 50044 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 49985 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 49984 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 49943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028924697855290