Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq339 91.5 1e-12 seq800 87.8 1e-11 seq940 86.0 4e-11 seq688 86.0 4e-11 >seq339 Length=1012135 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||||| Sbjct 49870 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGATCAGGGGGAATGCCTTCCTT 49811 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || || ||||| || ||| || | | ||| ||||| || Sbjct 49810 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 49751 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| ||||| || || Sbjct 49750 GGTTTTGCCAGTCAGGGTCTTCACGAAGATCTG 49718 >seq800 Length=2572578 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 627753 ACAATAAGATTTATCACCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGAT 627812 ||| | ||| | |||||||| ||||| ||||| || ||||||||| |||||||| || Sbjct 1456624 ACAGTGAGACATTTCACCATCTCGTCCAGCTCTGCCAGATTCTTGATAGTAACCTTCTAT 1456565 Query 627813 ATTTTTAGGTGCGCCATAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCC 627872 | |||||| | ||| || || | |||||| | ||||| ||| |||||||| Sbjct 1456564 AGATTTAGGAAGAGAAGCATGGATCACATAGCGCACATCAGGTTTATCAATTCCCATTCC 1456505 Query 627873 AAATGCAATTGTTGCA 627888 ||| |||||||||||| Sbjct 1456504 AAAGGCAATTGTTGCA 1456489 >seq940 Length=5565825 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 783024 CCATCACGACCAGCTCTCCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 782965 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || ||||||||||| || | ||| || Sbjct 782964 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAACGCCACTGTAGCC 782905 Query 627889 AC 627890 || Sbjct 782904 AC 782903 >seq688 Length=1735070 Score = 86.0 bits (94), Expect = 4e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||||||||| || ||||| |||||||| || || ||||||||||| Sbjct 649590 GGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGCC 649531 Query 476150 AATGGTATTCTTAATGT 476166 ||||| || || ||||| Sbjct 649530 AATGGCATCCTGAATGT 649514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267878035244108