Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq213 87.8 2e-12 seq339 86.0 6e-12 >seq213 Length=2372662 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 151334 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 151392 |||||||| | ||||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 2159977 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAGTTCTGCTGATTGCTCTT 2159919 Query 151393 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437 |||||||||| ||| ||||| | |||||| |||||||| || || Sbjct 2159918 TCGGTTGCAAGAGTCTTTGTAGAGCATGTATGGTGTGCCAGTCTC 2159874 >seq339 Length=1012135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 137255 |||| |||| ||| | || ||||| || || |||||||| || | |||| || | Sbjct 50157 CGCAGCACTAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCA 50098 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||||| || || || |||||| |||| || | |||||||||||| || |||||||| || Sbjct 50097 -TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCCTTCCTT 50039 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| || || |||| | || | ||||| |||| || || || | || | Sbjct 50038 GTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGAT 49979 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| |||| || || || || || ||||| Sbjct 49978 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 49943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488501124157200