Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20peregrinus_20[refseq_20GCF_5F000337955.1_202013-02-05] 7,021 sequences; 1,171,973,431 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq839 125 8e-24 >seq839 Length=7456752 Score = 125 bits (138), Expect = 8e-24 Identities = 604/946 (64%), Gaps = 31/946 (3%) Strand=Plus/Minus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| ||||| || || || | ||| || ||||| | | ||| || ||||| || Sbjct 1340376 ATCAAACTTATTAGCAAAGAAGTGGTGGT--TTCTT-AGCACCCAGTTCAGATCTCCTAC 1340320 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 || || || || || || || ||||| || || |||| || || || | || || | Sbjct 1340319 CCCAAAAACACAGACAGAGCGAACGTGAACTCCATTGCATGGTGGGTAAGGTGCACCTTT 1340260 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | | || || ||| |||| |||||||| || ||||| | | || | |||||| || Sbjct 1340259 GGATATGTCACCTTCGAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGA 1340200 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || ||||||| |||| || | || || || || || | || | |||||| | | Sbjct 1340199 AACATCATACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTG 1340141 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | |||||||||| || ||||| || || || || || | |||||| ||||||| | | Sbjct 1340140 TTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCTATGAACT---TAA 1340084 Query 162419 CCGTTTTATCG-TATAGAATGTAAGAGACGTAGGAC--CTGGTCACAATAAAGTACGCGC 162475 |||| | | | ||| | | || | ||| | || | ||| || || | Sbjct 1340083 GTATTTTGCTGCTTTTTAATACATGTTCTATAAACCTTCTGCTAACTACAAAATAGGCAC 1340024 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 |||||||||| | || | | | ||| || ||| ||||||| || ||||| || Sbjct 1340023 TACCAGAAAAAATTGGAGTACTGAGAGGTGGCAGCTGTTTGTCTATGCCTGTGTTCTTTA 1339964 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG- 162594 | || | | | | | || || ||||||| | ||| || || || Sbjct 1339963 TTTTACCATGAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGC 1339908 Query 162595 ---TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCT 162651 | ||| || || | ||||| ||| | ||| || | | || || || Sbjct 1339907 ATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCC 1339848 Query 162652 AGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTT--AA 162709 | |||||||| | |||||||| | || || || || || | |||||||| || || Sbjct 1339847 TGGTTGGTCTTTATAGGAAAGTCCATACCACAAAGGTTTATTAGGTATTTCCAGTTTGAA 1339788 Query 162710 CGCTGAGTCC-GTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGAC 162768 | | ||| ||| ||||| | | ||||| | || ||||| || | ||||| || Sbjct 1339787 CTTT---TCCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAA 1339731 Query 162769 GCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATC 162828 || ||||| || ||||| ||| ||| | ||||||||| || ||||| || ||||| Sbjct 1339730 GCATACACAACACTCTCTAACTGGCTGGAAATAAAGACATTCTCAAAACATGAGACTATG 1339671 Query 162829 CCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTAT 162885 ||| |||| || || | || | || || ||| | || || || | |||||| Sbjct 1339670 CCCTTCACAGC-AGCAAAAAAAGACTCTGGAGACTTTT--TGTCAACATGAATGCAGTAA 1339614 Query 162886 AGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGT 162945 | |||||||||||| ||||| | || || | ||| || | |||||| || || || | Sbjct 1339613 AAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAA 1339554 Query 162946 ACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAG 163005 ||||| || || || || || || || || || || || ||||||| | ||| | Sbjct 1339553 ACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATG 1339494 Query 163006 TACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAA 163051 ||||| || | | || | |||||||| | |||||||||| Sbjct 1339493 TACTTCCGAGTCTTGGTGAAAGAGGCACAGTCTGCTGTCATGTTAA 1339448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578381235361600