Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 5e-13 seq8 82.4 8e-11 >seq6 Length=157563209 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| ||||| || || ||||| || | ||||| Sbjct 136713331 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 136713390 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| ||||| |||||||| || ||||||||||| || || || || | ||||| || Sbjct 136713391 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAAATGCCTTCTACTGCAGCAAAGGC 136713449 >seq8 Length=115844353 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | ||||||||| ||||| ||||| || || ||||| || || Sbjct 101497728 ATGTAGGTGTCAATAAGAAGACTGTACATCTCTGAATGTATATTTTCCATGGCAATTTGG 101497669 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || ||||| || | ||||||||||| Sbjct 101497668 AAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 101497631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511277417652960