Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq20 141 1e-28 seq13 100 3e-16 >seq20 Length=21938106 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 |||||||||||||||||||| | |||||||||||| || || |||||| ||| ||| Sbjct 7131161 AACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCAGACCGGGGACCAGATGATGTACTGC 7131102 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 |||| | ||| |||| | ||||||| || ||||| |||||| |||||| Sbjct 7131101 GGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAAG 7131042 Query 83264 GCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTC 83323 | |||||| || || || || ||||| ||||||||||||||||| || || || || Sbjct 7131041 GTGAAGAGGGGGTGCGCGTTTTTCCCGTTCACCTCGCACTTCTCGAACAGGATGAAATTT 7130982 Query 83324 GGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 || | | | ||||| |||||||| ||||||| Sbjct 7130981 GGTTTGTACCCGTTGCCAGGACGAACGTGCT 7130951 >seq13 Length=64724594 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 9762474 TTACCTGGTATCCAAACTGGTTACAGGGGAATCCCAGCACGACCAGCCGCCGGG--GGTA 9762531 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 9762532 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGAAG 9762590 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| || || | || |||||||| || Sbjct 9762591 CCACGTTCTCAATCAGGACCACGCGGCCCCGGAA 9762624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/242 (70%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 || |||| ||||||| ||||||||| || ||||||| | |||| ||| | ||| || Sbjct 9762134 CCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATGTCGGAGCGCCGCACAGGG 9762193 Query 83186 GACCAGG---CAATGAGCTGGGGGTCGC---TCACGAGCGTGCTCATGTCGTCGCTAGGC 83239 ||||| ||| ||| |||| ||| ||| | | ||| | |||| ||| || Sbjct 9762194 CTCCAGGTGACAA--AGC-GGGGCTCGGCCATCAGGTGTGTGGCCTCGTCG--GCT-GGT 9762247 Query 83240 GCCGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || |||||| | || | ||| ||||||| | ||||| | | ||||| |||| Sbjct 9762248 GCAGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTGTCAGTCCCGTTCACCTG 9762306 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||| || | ||||| ||||||||||| ||| || || ||||||||||| Sbjct 9762307 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCGGGCCGCACGTGCTTCAG 9762366 Query 83359 GG 83360 || Sbjct 9762367 GG 9762368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608633733777120