Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq27 158 1e-33 seq23 143 3e-29 seq8 134 1e-26 seq16112 84.2 2e-11 >seq27 Length=11933672 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||||||| | || ||||| ||| Sbjct 8214818 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8214877 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || ||||| | ||||| Sbjct 8214878 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 8214936 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8214937 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8214996 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| ||||| | ||||||||| Sbjct 8214997 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGCGGC 8215045 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||||||| | || ||||| ||| Sbjct 8216683 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216742 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || ||||| | ||||| Sbjct 8216743 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 8216801 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8216802 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8216861 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| ||||| | ||||||||| Sbjct 8216862 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGCGGC 8216910 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||||||| | || ||||| ||| Sbjct 8216455 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216514 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || || Sbjct 8216515 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 8216573 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8216574 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8216633 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| ||||| | ||||| || Sbjct 8216634 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8216681 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40705 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AAC 40763 || || || || ||||| |||||||| | || || ||| ||| |||| | | | ||| Sbjct 8215876 AAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGAGAAC 8215935 Query 40764 GCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTA 40823 | | |||| || || | ||||| || ||||| ||| | || ||||| | || |||| Sbjct 8215936 G-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTT 8215994 Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 || ||||| |||||||| || | |||||||| |||||||||||||||||||||| | Sbjct 8215995 TGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTC 8216054 Query 40884 CACGCTGCATCTAGTGTTGCGCTTGAGGGGC 40914 ||| ||||| || ||| ||||| | |||||| Sbjct 8216055 CACCCTGCACCTGGTGCTGCGCCTCAGGGGC 8216085 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || || ||| | |||||||| | || || | ||| ||||| |||||||| Sbjct 8216320 GACAAGGAAGGAATTCCCCCTGACCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAA 8216379 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | || ||||| ||||||||||||||||||||| | || ||||| || ||| || Sbjct 8216380 GATGGTCGTACCCTGTCAGACTACAACATCCAGAAGGAGTCAACTCTGCACCTGGTGCTG 8216439 Query 40903 CGCTTGAGGGGCGG 40916 ||| | ||||| || Sbjct 8216440 CGCCTCAGGGGTGG 8216453 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 8214706 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 8214765 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| ||||| || ||| ||||| | ||||| || Sbjct 8214766 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8214816 >seq23 Length=14943019 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || ||||| ||| Sbjct 1915377 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1915436 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | ||||| || || ||||| | |||||| Sbjct 1915437 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 1915496 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | || ||||| ||||||||| Sbjct 1915497 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1915556 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || ||||| | ||||| || Sbjct 1915557 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1915603 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| ||||||||| | || ||||| | Sbjct 1914427 AAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCT 1914486 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| ||||| | ||||| || || ||||| | ||| Sbjct 1914487 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATCCCTCCTGAC 1914546 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | || ||||| |||||| Sbjct 1914547 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTAC 1914606 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || ||||| || || ||||| | ||||| || Sbjct 1914607 AACATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1914656 Score = 104 bits (114), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || ||||| ||| Sbjct 1915157 ATGCAGATCTTTGTCAAGACCCTGACAGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1915216 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | |||||| Sbjct 1915217 GACACCATTGAGAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGACCAG 1915276 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | | | | ||||||||| Sbjct 1915277 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG---GTATCT-----GACTACAAC 1915328 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| | ||| ||||| | ||||| ||| Sbjct 1915329 ATCCAGAAAGAATCCACCCTGCACTTGGTGCTGCGCCTCAGGGGTGGC 1915376 >seq8 Length=115844353 Score = 134 bits (148), Expect = 1e-26 Identities = 98/114 (86%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 101496800 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 101496859 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 101496860 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 101496913 >seq16112 Length=300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| |||||| || |||||||| || | ||| Sbjct 88 GGGATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGC 29 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 28 ACCCTCGCTGACTACAACATCCAGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515081198537280