Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 >seq6 Length=157563209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| ||||||||||| ||| Sbjct 107514449 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCT 107514508 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | || || ||||| | || || || | | |||| ||||| Sbjct 107514509 AGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAG 107514568 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGA 97288 ||||| | | |||| || || ||||| ||||| | | || ||||| || Sbjct 107514569 AACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCTGGGAAATATCTAGGA 107514620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| ||||| ||||| || ||||| | || || || ||| Sbjct 107518293 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 107518352 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || || ||||| ||||||||||| Sbjct 107518353 CTGCTGCTGAAACCCTGCTTATC----CAGGAACTCACGGGACCCATTAGCATCCCAAAT 107518408 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | ||| || ||| | ||||||||| Sbjct 107518409 CTTCACGCCTTTTGCAGAGAGCTCTTTG 107518436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346693436057960