Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 1e-13 seq8 82.4 7e-11 >seq23 Length=14943019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || || ||||| || |||||||| || ||| ||| Sbjct 1915361 CAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG--ATACC------ATC 1915310 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 1915309 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1915250 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | |||||| || |||||| || | || | || Sbjct 1915249 TTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGT 1915190 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 1915189 CTTGCCTGTCAGGGTCTTGACAAAGATCTGCATG 1915156 >seq8 Length=115844353 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| ||| || ||||| |||||| ||||| || ||||| ||| Sbjct 856515 CTTTTTGAATGTTGTAGTCGGACAGTGTGCGTCCATCCTCCAGCTGCTTCCCAGCAAAGA 856456 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | || ||||||||||| ||||| ||||| Sbjct 856455 TCAGCCGCTGCTGATCCGGAGGGATGCC 856428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433717103564176