Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq27 111 1e-19 seq23 104 2e-17 >seq27 Length=11933672 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || ||||| | || | |||||||||||| | || || ||||| |||||||||||| Sbjct 8215047 AAGCCGCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 8214988 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 ||||| || | || |||| ||||||||| || || || |||| ||||||||| Sbjct 8214987 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 8214928 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||||| ||||| ||| | | | || | || | | ||| Sbjct 8214927 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCG 8214868 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||| |||||||| ||||| || || |||||||| |||||||||||| Sbjct 8214867 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCATC 8214817 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || || ||||| ||||||||||||||||| || | || Sbjct 8216667 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8216608 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| |||||| || ||| | || |||||||| Sbjct 8216607 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 8216548 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | ||||| |||| |||||||| Sbjct 8216547 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 8216488 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || |||||||| |||||||||||| Sbjct 8216487 CTTGCCAGTCAGGGTTTTCACGAAGATCTGCATC 8216454 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || ||||| | || | |||||||||||| | || || ||||| |||||||||||| Sbjct 8216912 AAGCCGCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 8216853 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 ||||| || | || |||| ||||||||| || || || |||| ||||||||| Sbjct 8216852 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 8216793 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||||| ||||| ||| | | | || | || | | ||| Sbjct 8216792 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCG 8216733 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||| |||||||| ||||| || || |||||||| |||||||||||| Sbjct 8216732 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCATC 8216682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | ||| || ||||| ||||||||||| ||||| ||| | || Sbjct 8216439 CAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCTGACAGGGTACGACCATC 8216380 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| |||||||| |||| ||||||||| ||| | | |||||||| Sbjct 8216379 TTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTC 8216320 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || || ||||| ||||||||||||||||| || | || Sbjct 8216073 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8216014 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| |||||| || ||| | || |||||||| Sbjct 8216013 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 8215954 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | ||| || |||| |||||||| Sbjct 8215953 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGT 8215894 Query 34357 TTTGCCGGTGAGAGTTTT 34374 ||||| || || || || Sbjct 8215893 CTTGCCAGTCAGGGTCTT 8215876 >seq23 Length=14943019 Score = 104 bits (114), Expect = 2e-17 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||| ||| | || ||||||||| ||||||||||| || | | || Sbjct 1915361 CAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGATACCA--------TC 1915310 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 1915309 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1915250 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | || | || | | ||||| |||| ||||| || Sbjct 1915249 TTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGT 1915190 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 1915189 CTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || ||||| | ||| || ||||| ||||||||||| ||||| |||| | || Sbjct 1915589 CAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1915530 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||| || |||| ||||||||| || | | |||||||| Sbjct 1915529 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 1915470 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 1915469 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1915410 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||||||||| Sbjct 1915409 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1915377 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || ||||| | ||| || ||||| ||||||||||| ||||| |||| | || Sbjct 1914642 CAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1914583 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| ||||||||| || | | |||||||| Sbjct 1914582 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 1914523 Query 34297 GGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | || | || | || | | ||||| || | |||||| Sbjct 1914522 --CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATG 1914465 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || || || || ||||||||||| Sbjct 1914464 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1914430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322987628535680