Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq18 363 1e-95 seq52 95.1 8e-15 >seq18 Length=21346708 Score = 363 bits (402), Expect = 1e-95 Identities = 682/996 (68%), Gaps = 20/996 (2%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACA 107683 ||||| ||||| || || ||||| |||| |||||||| ||| || | ||| | Sbjct 18004107 TACCTGAACATGACGAGGGACTGCAGAGC-CTTCAAGGAGACCC---GGCGCTACATCGA 18004162 Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 |||||| ||||| | || ||| || |||||||| |||||||| ||||| |||| | Sbjct 18004163 GTTCCCGCTGAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACCA 18004222 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 || || || | ||||| ||||| ||||| ||||||| ||||| ||||| | ||||| Sbjct 18004223 CAAAATCGACATGTTTGAGCGGCTCCTGCGCTCCGTGTACGCCCCCCAGAATGTCTACTG 18004282 Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 ||||| ||||| || |||| | | ||| | ||||| || |||||| | | Sbjct 18004283 CGTCCATGTGGACAGCAAAGCCCCGGCCGCCTTCCAGGAGGCTGTGCGGGCCATCGCTGC 18004342 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||||||||| |||||| ||||||| ||| ||||| || ||| ||||| | Sbjct 18004343 CTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTACGCCGCCTGGCC 18004402 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | | |||| || ||||| ||||| ||| | ||| |||| |||||| | ||||| ||| Sbjct 18004403 CCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCGGTGCCGTGGCG 18004462 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| | | || || ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct 18004463 CTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATGGTCCG 18004522 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 ||| || || || || |||| | ||||| ||||||| ||| || || | |||| Sbjct 18004523 GGCGCTGCAGCTGCTGCAGGGCCACAACAGCGTGGAGTCAGAGAGGCCCTCGGCCGCCAA 18004582 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGT---GACAGACACACTGTACCCTACCAGCAA 108160 | | |||||||| | || ||| ||||| || | || | | | || | | Sbjct 18004583 GGAGCAGCGCTGGAAGTTCCACTACGAGGTGGGGAAGGGCA---TCTCTCGCACTGCCCA 18004639 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || ||| || || || | || | ||||||||||| || | || || | || Sbjct 18004640 GAAGAAATTGCCGCCACCCCACAACTACCCCATGTTCACGGGCAGCGCGTACAACGCGGT 18004699 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 | | || | ||| || || | ||||| || ||||| | ||||| | | || || Sbjct 18004700 CACGCGCGACTTCGTGCAGTACGTCTTCGAGAACCCCGCGGCACAAAGGTTCCTCGAGTG 18004759 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG 108340 | ||| |||| ||| |||||||| || ||| ||||||||||||| | || ||| | Sbjct 18004760 GTCCAAGGACAGCTACAGCCCCGATGAGCACGTCTGGGCCACCCTGAACCGCATGCCGGG 18004819 Query 108341 GATGCC---TGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCAT 108397 |||| ||| | || ||| | |||| || |||| ||||||| || | Sbjct 18004820 CGTGCCGGGGGGCGCGCCCCCGAGCGA---TAAGTTCCAGCTCTCGGACATGAACGCGCT 18004876 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 || | || |||||||||||||||| ||||| || | ||| ||| ||||| || | Sbjct 18004877 TCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGGGACATTCGCAAGGGCGCGCCCTACCC 18004936 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 |||||| | || ||| | | | |||||||| | ||||||| || ||| | ||| Sbjct 18004937 GCCCTGCACCGGCCGCCACCAGCGCACCATCTGCGTCTACGGGGTGGGCGACGTTCCCTG 18004996 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGT 108577 ||| || ||| | || || |||||||| |||||||| ||||| |||||| ||| | Sbjct 18004997 GATGCTGCAGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGC 18005056 Query 108578 CCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGC 108613 | |||||||| | || || |||| || || ||||| Sbjct 18005057 CGTGCAGTGCCTCGAGGAACACCTGCGCCACAAGGC 18005092 >seq52 Length=59856998 Score = 95.1 bits (104), Expect = 8e-15 Identities = 229/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| ||||| || || || ||||| ||||| || ||| | || | || Sbjct 31661763 CCTCTCAGTAATGAAGAAGCAGCATTTCCAATTGCTTACTCAATAGTGATTTATCACAAA 31661822 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || ||| || | | ||||| || ||||| | ||||| | Sbjct 31661823 ATTGAGATGCTTGATAGACTTCTGAGATCAATCTATGCTCCACAGAATTTTTACTGCATT 31661882 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || ||| ||||| ||||| | || | || || |||| || | || || Sbjct 31661883 CATGTAGATAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTTAAGGGAATAGTGTCATGT 31661942 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 31661943 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 31662002 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 31662003 GTGCAGGCAGACATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAACTGGAAAT 31662060 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || |||||| | ||||| || ||||||||||| Sbjct 31662061 ACCTAATAAACCTATGCGGTATGGACTTTCCTATAAAGACCAA 31662103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348177848296872