Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 5e-11 >seq1 Length=120002344 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| ||||| | |||||||| || || |||||| ||||| ||| || || Sbjct 621908 CAGCACATGCTGATGAGGGTGGCTGTGGGCATCCACAAGAGCGACATCGAGGCCGCCGTC 621967 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| | || || |||||| | || || ||| |||| |||||||||||| Sbjct 621968 GAGACCTACAACCTGCTGTCGGAGCGCTGGTTCACGCACGCCTCACCCACGCTCTTCAAC 622027 Query 249013 GCCGGTACC 249021 || || ||| Sbjct 622028 GCGGGCACC 622036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073471601461504