Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq27 116 3e-21 seq23 113 4e-20 >seq27 Length=11933672 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 8215026 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 8214967 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| ||||| | || ||||||||| Sbjct 8214966 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGG 8214907 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| || |||| ||| || |||||| Sbjct 8214906 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTG 8214847 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| ||||| Sbjct 8214846 CCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 8216891 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 8216832 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| ||||| | || ||||||||| Sbjct 8216831 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGG 8216772 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| || |||| ||| || |||||| Sbjct 8216771 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTG 8216712 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| ||||| Sbjct 8216711 CCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 8216663 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 8216604 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || || || | || ||||||||| Sbjct 8216603 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 8216544 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| || |||| ||| || |||||| Sbjct 8216543 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTG 8216484 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| ||||| Sbjct 8216483 CCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || || || || |||| || ||| || || || || | || |||||| Sbjct 8212947 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 8212888 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | |||| | ||| ||||| | ||| || Sbjct 8212887 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 8212828 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG-CCT-CAATACACACAGATGT 45359 ||||| || ||||| |||||||||||||| ||||||||| ||| ||| |||||||||||| Sbjct 8212827 GTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATGTTGACCTGCAAGACACACAGATGT 8212768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 8216069 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 8216010 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || || || | || ||||||||| Sbjct 8216009 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 8215950 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||||| || || |||||| Sbjct 8215949 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTCTTG 8215890 Query 45308 CCCGTCAGAGTCTT 45321 || ||||| ||||| Sbjct 8215889 CCAGTCAGGGTCTT 8215876 >seq23 Length=14943019 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||| ||||||||||| ||| || | || ||||| || Sbjct 1914633 GTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTG 1914574 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| || ||| ||||| ||||| | || ||||||||| ||||| Sbjct 1914573 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATTTT 1914514 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | | ||| ||||| | ||| || ||||||||||| Sbjct 1914513 GGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTGCCCGT 1914454 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| ||||| || ||||| ||||| || Sbjct 1914453 CAGGGTCTTGACGAAGATCTGCATTTT 1914427 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||| ||||||||||| ||| || | || ||||| || Sbjct 1915580 GTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTG 1915521 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| ||||| ||||| | || ||||||||| || || Sbjct 1915520 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTT 1915461 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||| | ||| || ||||||||||| Sbjct 1915460 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGT 1915401 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| || ||||| |||||| Sbjct 1915400 CAGGGTCTTGACGAAGATCTGCATG 1915376 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| || ||||| ||||||||||| || | | | || ||| Sbjct 1915357 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC----AGAT----ACCATCTTCC 1915306 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | ||||||||||| Sbjct 1915305 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGT 1915246 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| || |||| || || |||||| Sbjct 1915245 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTG 1915186 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| |||||||| |||||| Sbjct 1915185 CCTGTCAGGGTCTTGACAAAGATCTGCATG 1915156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394972024629988