Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 seq8 111 2e-19 seq3 107 3e-18 seq1 87.8 2e-12 >seq6 Length=157563209 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 136713329 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 136713388 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || ||||||||||| ||||||||||| ||||||| Sbjct 136713389 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAAATGCCTTCTACTGCAGCAAAGG 136713448 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 136713449 CAACCACTCTCTCACC 136713464 >seq8 Length=115844353 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 101499463 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 101499404 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 101499403 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 101499344 Query 36300 C 36300 | Sbjct 101499343 C 101499343 >seq3 Length=74947036 Score = 107 bits (118), Expect = 3e-18 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 9454 TTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATT 9513 |||||||| || ||||| || |||||||||| ||| ||||| ||||||||||| | Sbjct 34441738 TTAAAATCATCATGATAACATAC---CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACT 34441794 Query 9514 GTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAA 9573 | | ||||||||||||| ||||||| || |||||||| || || || ||||||| | Sbjct 34441795 GCAAGGTATATGCAGTCAATCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGA 34441854 Query 9574 CGACATGCACATCATAGAAA 9593 ||| |||||||||||| Sbjct 34441855 CGATGGAGACATCATAGAAA 34441874 >seq1 Length=120002344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || ||||| ||| | || || || || ||||| | Sbjct 639826 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTCCCATAGTTGGGCTCCGCAATGTGGATGT 639767 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 639766 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 639707 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || || || | |||| | ||||| |||| Sbjct 639706 TCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTTAGGTCTTCAGGAA 639656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657996508415520