Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq8 93.3 4e-14 >seq6 Length=157563209 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || | || ||||| || || | || || Sbjct 136713331 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 136713390 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 136713391 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAAATGCCTTCTACTGCAGCAAAGGCA 136713450 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 136713451 ACCACTCTCTCACC 136713464 >seq8 Length=115844353 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| || || || ||||| | |||| ||| || Sbjct 101499461 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 101499402 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| || |||||||| ||| Sbjct 101499401 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 101499342 Query 13295 A 13295 | Sbjct 101499341 A 101499341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430869847330056