Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8 159 8e-34 seq23 149 1e-30 seq27 134 3e-26 seq6 122 2e-22 >seq8 Length=115844353 Score = 159 bits (176), Expect = 8e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| ||||| | ||||| | ||||||||| Sbjct 83074991 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 83075050 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || || || ||||| ||||| || ||||| Sbjct 83075051 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCACGTCTATCACCATTTCACCATGTTC 83075110 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 83075111 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 83075153 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 101499328 GGAGAACGTGTAGTAGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 101499387 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 101499388 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 101499447 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 101499448 ATCAGTAGAGATGA 101499461 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || | Sbjct 101497608 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 101497667 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 |||| || || || |||||||| |||||||||||||||||||| | || || || || | Sbjct 101497668 TCCAAATTGCCATGGAAAATATACATTCAGAGATGTACAGTCTTCTTATTGACACCTACA 101497727 Query 269016 T 269016 | Sbjct 101497728 T 101497728 >seq23 Length=14943019 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 1914626 GTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCA 1914567 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| |||||||| || ||||| || || || || Sbjct 1914566 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTG 1914507 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || ||||| || ||||| || || || ||||| || || || || Sbjct 1914506 ACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 1914447 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 1914446 TTGACGAAGATCTGCATTTT 1914427 Score = 123 bits (136), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || |||||||| |||| ||||| || || || ||| Sbjct 1915345 GTGGATTCTTTCTGGATGTTGTAGTCAGA--------TACCATCTTCCAGCTGCTTGCCA 1915294 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || || || || || || ||||| || || Sbjct 1915293 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGTATCTTGGCCTTG 1915234 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || || |||||||| || || || || Sbjct 1915233 ACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCTGTCAGGGTC 1915174 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1915173 TTGACAAAGATCTGCAT 1915157 >seq27 Length=11933672 Score = 134 bits (148), Expect = 3e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || |||||||| || |||||||| ||||| || || || ||||| Sbjct 8212950 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8212891 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| || || |||||||| | ||| || || || || ||||| || || Sbjct 8212890 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 8212831 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||||||||| || || || ||||| |||||||| ||| Sbjct 8212830 ATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 8212789 >seq6 Length=157563209 Score = 122 bits (134), Expect = 2e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || |||||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 136713452 GTTGCCTTTGCTGCAGTAGAAGGCATTTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 136713393 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 136713392 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 136713333 Query 269258 GA 269259 || Sbjct 136713332 GA 136713331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151082287887024