Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16 176 6e-39 seq24 116 5e-21 >seq16 Length=32100816 Score = 176 bits (194), Expect = 6e-39 Identities = 217/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 6273797 GGAAGGCAGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 6273738 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || |||||||||||||| |||||||| | |||| Sbjct 6273737 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 6273678 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| ||||| ||||| | ||| | ||| Sbjct 6273677 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCCCCGATCTCCACCATGG 6273618 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 6273617 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 6273558 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| ||||| || || || || || || || || |||||||||| Sbjct 6273557 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 6273501 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || || ||||| ||| || || || | || || || Sbjct 6271882 ATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGC 6271823 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || ||||| || | |||||| || | |||||||| || ||||||||||| || || ||| Sbjct 6271822 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 6271763 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| || || |||| || || || | | ||| | || ||||| | ||| || Sbjct 6271762 ACCAGCCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCAGGCACGTGGGGCGGG 6271703 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | | |||| || |||| || || ||||| || ||||| || ||| Sbjct 6271702 TACAGCATCTCCGCCTGCGTGTCCCGCACCGTCGGCGGGTACATCTCGCCGTCGATCATC 6271643 Query 9862 TG 9863 || Sbjct 6271642 TG 6271641 >seq24 Length=12378331 Score = 116 bits (128), Expect = 5e-21 Identities = 183/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | |||| ||| || |||||| || || || || || | ||| Sbjct 10569720 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACAAGCTTCTCGAGGGATGCTG 10569661 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || ||||| || || || ||||| |||||||| | |||| Sbjct 10569660 TCTTAACGATCTCAAAGCCAGTTTCTCCACCAAATGTACTGGGCTTCCAGTACTCTGGGG 10569601 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 10569600 AGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 10569541 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| |||| || || | || || || | ||| ||||||| Sbjct 10569540 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 10569481 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 10569480 GAGCATCAATGTCTCCATACAG 10569459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708335021632320