Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq27 113 4e-20 seq23 93.3 3e-14 >seq27 Length=11933672 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| ||||| Sbjct 8215030 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTC 8214975 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || ||||| ||| | || |||| ||| ||||| ||| | || || | Sbjct 8214974 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCT 8214915 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | |||||| ||||| ||| Sbjct 8214914 TGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGT 8214857 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| ||||| || || |||||||| Sbjct 8214856 GATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| ||||| Sbjct 8216895 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTC 8216840 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || ||||| ||| | || |||| ||| ||||| ||| | || || | Sbjct 8216839 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCT 8216780 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | |||||| ||||| ||| Sbjct 8216779 TGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGT 8216722 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| ||||| || || |||||||| Sbjct 8216721 GATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| ||||| Sbjct 8216667 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTC 8216612 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || ||||| ||| | || |||| ||| || || || | ||| || | Sbjct 8216611 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCT 8216552 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | |||||| ||||| ||| Sbjct 8216551 TGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGT 8216494 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| ||||| || || |||||||| Sbjct 8216493 GATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/217 (70%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| ||||| Sbjct 8216073 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTC 8216018 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| || ||||| ||| | || |||| ||| || || || | ||| || | Sbjct 8216017 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCT 8215958 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || |||||| | | | ||||| | ||| ||| |||| || Sbjct 8215957 TGTCCTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGT 8215900 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACA---AAAATC 16930 |||||| || || ||||| || ||| || |||||| Sbjct 8215899 GATGGTCTTGCCAGTCAGGGTCTTGCCACCCAAAATC 8215863 >seq23 Length=14943019 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||| | || ||| | | || |||| || Sbjct 1914632 TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGC 1914573 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| ||||| ||| | || || ||||| |||| Sbjct 1914572 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATTTTG 1914513 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | ||||| || | ||||||||| || || ||| Sbjct 1914512 GCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTC 1914453 Query 16913 AGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| || ||||||||||| Sbjct 1914452 AGGGTCTTGACGAAGATCTGCATTTT 1914427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||| | || ||| | | || |||| || Sbjct 1915579 TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGC 1915520 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| ||||| ||| | || || ||||| || || Sbjct 1915519 TTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTG 1915460 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | |||||| || | ||||||||| || || | Sbjct 1915459 GC--CTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCG 1915402 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || |||||||| Sbjct 1915401 TCAGGGTCTTGACGAAGATCTGCAT 1915377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404982209749720