Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 seq8 111 2e-19 seq1 86.0 8e-12 >seq6 Length=157563209 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 136713329 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 136713388 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || ||||||||||| ||||||||||| ||||||| Sbjct 136713389 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAAATGCCTTCTACTGCAGCAAAGG 136713448 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 136713449 CAACCACTCTCTCACC 136713464 >seq8 Length=115844353 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 101499463 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 101499404 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 101499403 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 101499344 Query 32803 C 32803 | Sbjct 101499343 C 101499343 >seq1 Length=120002344 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 ||| || ||||| ||||||||||| ||||| ||||| | || || || |||| | || Sbjct 627913 CACCCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCCCGCTG 627854 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 627853 CTCCTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCAGGG 627794 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 627793 CTCCAGGTAGATGGCAAAAGCCCCAGG 627767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || ||||| ||| | || || || || ||||| | Sbjct 639826 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTCCCATAGTTGGGCTCCGCAATGTGGATGT 639767 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || || ||||||||||| || |||||||||||||| || | || || | Sbjct 639766 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 639707 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | || ||||| | || || || | |||| | ||||| |||| Sbjct 639706 TCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTTAGGTCTTCAGGAA 639656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633462281668800