Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23 98.7 8e-16 >seq23 Length=14943019 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| ||||| || ||| Sbjct 1915157 ATGCAGATCTTTGTCAAGACCCTGACAGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1915216 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| ||||| || || || Sbjct 1915217 GACACCATTGAGAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGACCAG 1915276 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| || || || |||||| Sbjct 1915277 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGAT--------GGTATCTGACTACAAC 1915328 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | || || || |||| Sbjct 1915329 ATCCAGAAAGAATCCACCCTGCACTTGGTGCTGCG 1915363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419618386458820