Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 >seq1 Length=120002344 Score = 149 bits (164), Expect = 1e-30 Identities = 167/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || |||||||||||| ||| |||||||||||| |||||| || | | | |||| ||| Sbjct 633636 CACCCCCTTGCTGACCGGGGAGCCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGG-CCA 633578 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| |||||||||||||||| ||||| || ||| | | Sbjct 633577 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGA 633518 Query 244437 CGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 | |||| | || ||||||| | ||| | |||||| |||| ||||| |||| Sbjct 633517 GCTGAGCCTGGGGGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCT 633458 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||||||||||||||||||| | ||| ||| |||||||||| Sbjct 633457 GCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGC 633417 Score = 143 bits (158), Expect = 5e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||| | || ||||||||||| ||||| ||||||||||||| Sbjct 630867 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 630808 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 630807 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 630748 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 630747 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 630688 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 630687 TGCGCACGCGGCCCTGCCGCTCGTAGC 630661 Score = 113 bits (124), Expect = 9e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || ||||||||| || ||||||||||| || ||| |||||||||| || |||| Sbjct 627912 ACCCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCCCGCTGC 627853 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || ||||||||| ||| |||| || ||||||| ||| | |||||||||| Sbjct 627852 TCCTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCAGGGC 627793 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 627792 TCCAGGTAGA 627783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944086258745280