Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16 181 2e-40 seq24 114 2e-20 >seq16 Length=32100816 Score = 181 bits (200), Expect = 2e-40 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| |||||||| ||| || ||||| ||| | || || | Sbjct 6273797 GGAAGGCAGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 6273738 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 6273737 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 6273678 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| ||||| ||||| | ||| | ||| Sbjct 6273677 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCCCCGATCTCCACCATGG 6273618 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 6273617 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 6273558 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 6273557 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 6273498 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | ||||||||| |||| || ||||| | | | ||||| Sbjct 6271882 ATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGC 6271823 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | |||||| Sbjct 6271822 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 6271763 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | || |||| | || ||||| | ||||| Sbjct 6271762 ACCAGCCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCAGGCACGTGGGGCGGG 6271703 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | | |||| || || || || || || ||||| || ||||| || | | Sbjct 6271702 TACAGCATCTCCGCCTGCGTGTCCCGCACCGTCGGCGGGTACATCTCGCCGTCGATCATC 6271643 Query 9967 TG 9968 || Sbjct 6271642 TG 6271641 Score = 109 bits (120), Expect = 8e-19 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||| | || ||| ||| |||| || | |||| | ||||| | | | |||| Sbjct 6273055 CCAGCACTTTGCTTAGAGAAAGATTTGACCATATGGGAGAGGCCGTGTTCCAGCATGATG 6272996 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | ||| || | | | |||| | |||| ||| | || ||| Sbjct 6272995 GAGTTGTTGTAGAGGAACTGCTGGAAGGTGTACTCCTGGTCGTGGATGTGGAAGGTGTCA 6272936 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | |||||| |||| || || ||||||||||| || || |||||||||||| Sbjct 6272935 GGCAGCAATGGGTGCCAGTGGTACAGCGTGTTGAACTCGGCTGCGATGCGGTTCTGGTAC 6272876 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || ||| ||| || | ||| |||||||| | |||| |||||||||||||| Sbjct 6272875 TGGAACCTCTGGT--TGAAGAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCGC 6272818 Query 9674 TGAGTTGCTGGACATA 9689 | || ||||| ||||| Sbjct 6272817 TCAGGTGCTGCACATA 6272802 >seq24 Length=12378331 Score = 114 bits (126), Expect = 2e-20 Identities = 207/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTG--GCACAAATGAGGGACTGAATGGTTGC 8937 ||||||| | |||| || |||||| ||| ||||| | || || | || ||| Sbjct 10569720 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACA--AGCTTCTCGAGGGATGC 10569663 Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997 || || ||||| || || || || || || || || ||||| ||||||||| | || Sbjct 10569662 TGTCTTAACGATCTCAAAGCCAGTTTCTCCACCAAATGTACTGGGCTTCCAGTACTCTGG 10569603 Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057 |||||||||| || | | ||||| |||| |||||| ||||| || | ||| | || Sbjct 10569602 GGAGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCAT 10569543 Query 9058 GCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTC 9117 ||| || || || ||| || ||| | ||||| |||| | ||||| | ||| | || Sbjct 10569542 GCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTC 10569483 Query 9118 GACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTAC 9177 | ||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| | Sbjct 10569482 CAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGC 10569423 Query 9178 A 9178 | Sbjct 10569422 A 10569422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723534149455200