Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27 145 8e-30 seq23 131 2e-25 seq8 95.1 1e-14 seq6 84.2 2e-11 >seq27 Length=11933672 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| ||||||||| | || |||||| ||| Sbjct 8214818 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8214877 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 8214878 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 8214936 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8214937 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8214996 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| | || |||||| Sbjct 8214997 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGCGGC 8215045 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| ||||||||| | || |||||| ||| Sbjct 8216683 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216742 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 8216743 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 8216801 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8216802 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8216861 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| | || |||||| Sbjct 8216862 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGCGGC 8216910 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| ||||||||| | || |||||| ||| Sbjct 8216455 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216514 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 8216515 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 8216573 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 8216574 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8216633 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || ||||| |||||||||| Sbjct 8216634 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 8216669 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38259 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AAC 38317 || || || || ||||| |||||||| | || || || ||| |||| | | | ||| Sbjct 8215876 AAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGAGAAC 8215935 Query 38318 GCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTA 38377 | | || | || |||| ||||| || || |||||| | || || ||| |||| || | Sbjct 8215936 G-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTT 8215994 Query 38378 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGC 38437 || ||||| |||||||| || | |||||||| ||||||||||||||| ||||| | Sbjct 8215995 TGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTC 8216054 Query 38438 GACGCTGCATTTGGTGCTGCG 38458 || ||||| |||||||||| Sbjct 8216055 CACCCTGCACCTGGTGCTGCG 8216075 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || ||||||||| | ||||| ||| |||| |||| ||| ||||| Sbjct 8216311 AAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAGCAGAGGCTGATTTTCGCTGGCAAG 8216370 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | || ||||| |||||||||||||| ||||| | || ||||| Sbjct 8216371 CAGCTGGAAGATGGTCGTACCCTGTCAGACTACAACATCCAGAAGGAGTCAACTCTGCAC 8216430 Query 38448 TTGGTGCTGCG 38458 |||||||||| Sbjct 8216431 CTGGTGCTGCG 8216441 >seq23 Length=14943019 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || |||||| ||| Sbjct 1915377 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1915436 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 1915437 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 1915496 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | || ||||| ||||||||| Sbjct 1915497 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1915556 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| |||| ||||| | || ||||| Sbjct 1915557 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCG 1915591 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || |||||||| ||||||||| | || |||||| | Sbjct 1914427 AAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCT 1914486 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||||||| ||||| || ||||| || | ||| Sbjct 1914487 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATCCCTCCTGAC 1914546 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | || ||||| |||||| Sbjct 1914547 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTAC 1914606 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| ||||| | || ||||| Sbjct 1914607 AACATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCG 1914644 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || ||||| | || |||||| ||| Sbjct 1915157 ATGCAGATCTTTGTCAAGACCCTGACAGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1915216 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| ||||| |||||| | ||||| Sbjct 1915217 GACACCATTGAGAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGACCAG 1915276 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | | | | ||||||||| Sbjct 1915277 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG---GTATCT-----GACTACAAC 1915328 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| ||||||||||| | || || ||| Sbjct 1915329 ATCCAGAAAGAATCCACCCTGCACTTGGTGCTGCGCCTCAGGGGTGGC 1915376 >seq8 Length=115844353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 101496913 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 101496854 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || |||||||||||||| || |||| |||||||||| Sbjct 101496853 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 101496799 >seq6 Length=157563209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 136713329 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 136713388 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||| | ||| || || || || || | Sbjct 136713389 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAAATGCCTTCTACTGCAGCAAAGG 136713448 Query 133037 CCACCA 133042 | |||| Sbjct 136713449 CAACCA 136713454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500038828715520